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SECURITIES AND EXCHANGE COMMISSION
Washington, D. C. 20549

FORM 8-K

CURRENT REPORT
PURSUANT TO SECTION 13 OR 15(D) OF THE
SECURITIES EXCHANGE ACT OF 1934

Date of report (Date of earliest event reported): September 16, 2002

ISIS PHARMACEUTICALS, INC.
(Exact Name of Registrant as Specified in Charter)

Delaware
(State or Other Jurisdiction of Incorporation)

000-19125
(Commission File No.)
33-0336973
(IRS Employer Identification No.)

2292 Faraday Avenue
Carlsbad, CA 92008
(Address of Principal Executive Offices and Zip Code)

Registrant's telephone number, including area code: (760) 931-9200





Item 5.    Other Events.

        On September 16, 2002, Isis Pharmaceuticals, Inc. announced it had settled litigation pending against Sequitur, Inc. ("Sequitur). Isis had sued Sequitur, in three separate lawsuits, for alleged infringement of U.S. Patent Nos. 6,001,653; 6,326,199; 6,096,543; 5,959,097; and 5,958,773.

        Isis and Sequitur reached a mutually agreeable business resolution that resulted in the dismissal of the three lawsuits and all counterclaims. Isis has granted Sequitur a license to certain Isis patents for target validation and functional genomics using first generation antisense oligonucleotides (also known as phosporothioate and/or phosphodiester deoxy antisense oligonucleotides) in exchange for undisclosed payments from Sequitur. Subject to a limited right to conclude existing customer contracts, Sequitur has agreed that it will not practice in the field of "second generation" or "next generation" antisense oligonucleotides, also known as chimeric antisense oligonucleotides.

Item 7.    Exhibits.

10.1 * Settlement, Release, and License Grant Agreement dated September 6, 2002 between Isis Pharmaceuticals, Inc. and Sequitur, Inc.

99.1

 

Press Release dated September 16, 2002 regarding Sequitur, Inc. and Isis Pharmaceuticals, Inc.

        *    Confidential treatment has been requested with respect to certain portions of this exhibit. Omitted portions have been filed separately with the Securities and Exchange Commission.




SIGNATURE

        Pursuant to the requirements of the Securities Exchange Act of 1934, as amended, the registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.

    Isis Pharmaceuticals, Inc.
         

Dated: September 16, 2002

 

By:

 

/s/  
B. LYNNE PARSHALL      
B. Lynne Parshall
Executive Vice President, Chief
Financial Officer and Director


INDEX TO EXHIBITS

10.1 * Settlement, Release, and License Grant Agreement dated September 6, 2002 between Isis Pharmaceuticals, Inc. and Sequitur, Inc.

99.1

 

Press Release dated September 16, 2002 regarding Sequitur, Inc. and Isis Pharmaceuticals, Inc.

        *    Confidential treatment has been requested with respect to certain portions of this exhibit. Omitted portions have been filed separately with the Securities and Exchange Commission.





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SIGNATURE
INDEX TO EXHIBITS

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Exhibit 10.1

        CONFIDENTIAL TREATMENT REQUESTED
UNDER 17 C.F.R. §§200.80(b)4, AND 240.24b-2


SETTLEMENT, RELEASE, AND LICENSE GRANT AGREEMENT

        This SETTLEMENT, RELEASE, AND LICENSE GRANT AGREEMENT (hereinafter the "Agreement") is made and entered into effective on September 6, 2002, by and between Isis Pharmaceuticals, Inc. on the one hand and Sequitur, Inc. on the other hand.

        Whereas, Isis Pharmaceuticals, Inc. is the owner of all rights, title and interest to United States Patent Number 6,001,653, 6,326,199, 5,959,097, 5,958,773, 6,043,090 and 6,096,543;

        Whereas, on July 9, 2001, Isis Pharmaceuticals, Inc. instituted suit against Sequitur, Inc. in the United States District Court for the Southern District of California, Case No. 01 CV 1223 B JFS (hereinafter the "First Action"), seeking injunctive relief and damages against Sequitur, Inc. based on the allegation that Sequitur, Inc. was infringing U.S. Patent No. 6,001,653;

        Whereas, Sequitur, Inc. denied all allegations of infringement in the First Action and Sequitur, Inc. further filed a counterclaim alleging that it was entitled to declaratory judgment of non-infringement, invalidity and/or unenforceability, and alleging claims of breach of contract, unfair competition under the Lanham Act, Antitrust Violations and unfair competition under California Law (the "Counterclaim");

        Whereas, Isis Pharmaceuticals, Inc. denied all allegations of breach of contract, unfair competition and antitrust violations in the Counterclaim;

        Whereas, on December 12, 2001, Isis Pharmaceuticals, Inc. instituted suit against Sequitur, Inc. in the United States District Court for the Southern District of California, Case No. 01 CV 2286 B JFS (hereinafter the "Second Action"), seeking injunctive relief and damages against Sequitur, Inc. based on the allegation that Sequitur, Inc. was infringing U.S. Patent No. 6,326,199;

        Whereas, Sequitur, Inc. denied all allegations of infringement in the Second Action;

        Whereas, on May 2, 2001, Isis Pharmaceuticals, Inc. instituted suit against Sequitur, Inc. in the United States District Court for the Southern District of California, Case No. 02 CV 0842 B JFS (hereinafter the "Third Action"), seeking injunctive relief and damages against Sequitur, Inc. based on the allegation that Sequitur, Inc. was infringing U.S. Patent Nos. 5,959,097, 5,958,773, 6,043,090 and 6,096,543;

        Whereas, Sequitur, Inc. denied all allegations of infringement in the Third Action; and

        Whereas, the parties to this Agreement deny any and all liability to one another, but desire to fully compromise and resolve all of the claims between them arising from or in any way related to the First Action, Second Action, Third Action and the Counterclaim ("the Lawsuit");

        Now, Therefore, to reconcile their differences and in consideration of the promises and covenants and agreements contained herein, the parties agree as follows:

1.    Definitions.

1


2


2.    Releases

3.    Restrictions on Use

3


4.    Mutual Covenants

4


5.    License Grants / Change of Control

6.    Consideration

7.    Statement of Confirmation

5


8.    Confidentiality and Publicity

9.    Disposition of Pending Lawsuits and Allocation of Costs

10.    Term and Termination

6


11.    Agreement Binding On Successors

12.    Nonassignability

13.    Notices

14.    Right to Review Records

7


15.    Dispute Resolution

16.    Integration

8


17.    Effect of Headings

18.    Severability

19.    Amendments

20.    Interpretation.

21.    Counterparts

The parties have duly authorized and caused this Agreement to be executed as follows:

Dated: September 6, 2002   By:   /s/ Grantland E. Bryce,
VP, Legal and General Counsel

Isis Pharmaceuticals, Inc.
         

Dated: September 6, 2002

 

By:

 

/s/ Tod Woolf, President

Sequitur, Inc.

9



Exhibit A

Sequitur's Existing Customers

        [***]



Exhibit B

Press Release (attached as Exhibit 99.1 to 8-K)




Exhibit C
Stipulated Dismissal and Proposed Order Thereon (attached)


STEPHEN P. SWINTON (106398)
KENT M. WALKER (173700)
COOLEY GODWARD LLP
4401 Eastgate Mall
San Diego, CA 92121-1909
Telephone: (858) 550-6000
Facsimile: (858) 550-6420

JOSEPH LUCCI (admitted pro hac vice)
WOODCOCK WASHBURN LLP
1 Liberty Place, 46th Floor
Philadelphia, PA 19103
Telephone: (215) 568-3100
Facsimile: (215) 568-3439

Attorneys for Plaintiff and Counterclaim Defendant
ISIS PHARMACEUTICALS, INC.

RICHARD WARBURG (155223)
ARTHUR A. WELLMAN, JR. (178309)
FOLEY & LARDNER
402 W. Broadway, 23rd Floor
San Diego, CA 92101-3542
Telephone: (619) 234-6655
Facsimile: (619) 234-3510

Attorneys for Defendant and Counterclaimant
SEQUITUR, INC.

UNITED STATES DISTRICT COURT

SOUTHERN DISTRICT OF CALIFORNIA

ISIS PHARMACEUTICALS, INC., a Delaware corporation,   No. 01 CV 1223, 01 CV 2286, and 02 CV 0842 B (JFS)

Plaintiff,

 

Stipulated Dismissal and [Proposed]
Order thereon

            v.

 

 

SEQUITUR, INC., a Delaware corporation,

 

 

Defendant.

 

 

And Related Counterclaims.

 

 



 

 

        Plaintiff and Counterclaim Defendant Isis Pharmaceuticals, Inc. and Defendant and Counterclaimant Sequitur, Inc., through their respective undersigned counsel, hereby stipulate that all

1



claims and counterclaims in the above-captioned actions are to be dismissed with prejudice, the parties bearing their own costs and fees of the actions.

Dated: September            , 2002   Respectfully submitted,

 

 

COOLEY GODWARD LLP
STEPHEN P. SWINTON (106398)
KENT M. WALKER (173700)

 

 

By:

 

 
       
Kent M. Walker

 

 

Attorneys for Plaintiff and Counterclaim
Defendant, ISIS PHARMACEUTICALS, INC.
Dated: September            , 2002        
    FOLEY & LARDNER
RICHARD WARBURG (155223)
ARTHUR A. WELLMAN, JR. (178309)

 

 

By:

 

 
       
Richard Warburg
Arthur A. Wellman, Jr.

 

 

Attorneys for Defendant and Counterclaimant SEQUITUR, INC.

2



ORDER

        Based on the stipulation of the parties, and good cause being shown, IT IS HEREBY ORDERED that all claims and counterclaims in the above-captioned actions are dismissed with prejudice, the parties bearing their own costs and fees of the actions.

        IT IS SO ORDERED.

Dated: September            , 2002    
   
Judge Rudi M. Brewster

3



Exhibit D
Stipulated Consent to Jurisdiction and Proposed Order Thereon (attached)


STEPHEN P. SWINTON (106398)
KENT M. WALKER (173700)
COOLEY GODWARD LLP
4401 Eastgate Mall
San Diego, CA 92121-1909
Telephone: (858) 550-6000
Facsimile: (858) 550-6420

JOSEPH LUCCI (admitted pro hac vice)
WOODCOCK WASHBURN LLP
1 Liberty Place, 46th Floor
Philadelphia, PA 19103
Telephone: (215) 568-3100
Facsimile: (215) 568-3439

Attorneys for Plaintiff and Counterclaim Defendant
ISIS PHARMACEUTICALS, INC.

RICHARD WARBURG (155223)
ARTHUR A. WELLMAN, JR. (178309)
FOLEY & LARDNER
402 W. Broadway, 23rd Floor
San Diego, CA 92101-3542
Telephone: (619) 234-6655
Facsimile: (619) 234-3510

Attorneys for Defendant and Counterclaimant
SEQUITUR, INC.

UNITED STATES DISTRICT COURT

SOUTHERN DISTRICT OF CALIFORNIA

ISIS PHARMACEUTICALS, INC., a Delaware corporation,   No. 01 CV 1223, 01 CV 2286, and 02 CV 0842 B (JFS)

Plaintiff,

 

Stipulated Consent to Jurisdiction
and [Proposed] Order thereon

            v.

 

 

SEQUITUR, INC., a Delaware corporation,

 

 

Defendant.

 

 

And Related Counterclaims.

 

 

   

        Whereas Plaintiff and Counterclaim Defendant Isis Pharmaceuticals, Inc. and Defendant and Counterclaimant Sequitur, Inc. executed a Settlement, Release, and License Grant Agreement ("the Agreement") whereby the parties stipulated that all claims and counterclaims in the above-captioned actions are to be dismissed with prejudice, the parties bearing their own costs and fees of the actions.

        Whereas in the Agreement the parties consented to the jurisdiction and venue of the United States District Court for the Southern District of California should any dispute arise between or among the parties concerning the interpretation and enforcement of the Agreement or the license grants in the Agreement not otherwise to be resolved by binding mediation pursuant to Section 15 of the Agreement.

1



        Therefore, the parties, by and through their respective attorneys of record, hereby stipulate to the following:

        1.    The United States District Court for the Southern District of California shall retain continuing jurisdiction over, and venue will be proper in, any dispute that may arise between or among the parties concerning the specific interpretation and enforcement of the Agreement and the license grants in the Agreement not otherwise to be resolved by binding mediation pursuant to Section 15 of the Agreement.

Dated: September            , 2002   Respectfully submitted,

 

 

COOLEY GODWARD LLP
STEPHEN P. SWINTON (106398)
KENT M. WALKER (173700)
    By:    
       
Kent M. Walker

 

 

Attorneys for Plaintiff and Counterclaim
Defendant, ISIS PHARMACEUTICALS, INC.
Dated: September            , 2002        
    FOLEY & LARDNER
RICHARD WARBURG (155223)
ARTHUR A. WELLMAN, JR. (178309)

 

 

By:

 

 
       
Richard Warburg
Arthur A. Wellman, Jr.

 

 

Attorneys for Defendant and Counterclaimant SEQUITUR, INC.


ORDER

        Based on the stipulation of the parties, and good cause being shown, IT IS HEREBY ORDERED that the United States District Court for the Southern District of California shall retain continuing jurisdiction over, and venue will be proper in, any dispute that may arise between or among the parties concerning the specific interpretation and enforcement of the Agreement and the license grants in the Agreement not otherwise to be resolved by binding mediation pursuant to Section 15 of the Agreement.

        IT IS SO ORDERED.

Dated: September            , 2002    
   
Judge Rudi M. Brewster

2




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SETTLEMENT, RELEASE, AND LICENSE GRANT AGREEMENT
Exhibit A Sequitur's Existing Customers
Exhibit B Press Release (attached as Exhibit 99.1 to 8-K)
Exhibit C Stipulated Dismissal and Proposed Order Thereon (attached)
ORDER
Exhibit D Stipulated Consent to Jurisdiction and Proposed Order Thereon (attached)
ORDER

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Exhibit 99.1

Contact:    Kristina Peterson
(760) 603-2521


ISIS PHARMACEUTICALS AND SEQUITUR SETTLE PATENT
INFRINGEMENT LAW SUIT

Sequitur Licenses Isis' Intellectual Property for Functional Genomics

Carlsbad, CA, September 16, 2002—Isis Pharmaceuticals, Inc. ("Isis") (NASDAQ:ISIS) announced today it has settled litigation pending against Sequitur, Inc. ("Sequitur). Isis had sued Sequitur, in three separate lawsuits, for alleged infringement of U.S. Patent Nos. 6,001,653; 6,326,199; 6,096,543; 5,959,097; and 5,958,773.

Isis and Sequitur reached a mutually agreeable business resolution that resulted in the dismissal of the three lawsuits and all counterclaims. Isis has granted Sequitur a license to certain Isis patents for target validation and functional genomics using first generation antisense oligonucleotides (also known as phosporothioate and/or phosphodiester deoxy antisense oligonucleotides) in exchange for undisclosed payments from Sequitur. Subject to a limited right to conclude existing customer contracts, Sequitur has agreed that it will not practice in the field of "second generation" or "next generation" antisense oligonucleotides, also known as chimeric antisense oligonucleotides.

"We are pleased with the favorable and expeditious end to this matter, as the settlement terms underscore the importance of Isis' intellectual property position in antisense technology," said B. Lynne Parshall, Isis Executive Vice President and CFO. "We are deriving value from our investment in innovation as we have licensed our patents to several industry partners who perform antisense-based functional genomics as part of internal drug discovery programs."

Isis owns a broad intellectual property estate of nearly 1000 issued patents that covers RNA-based drug discovery and development. The patent portfolio covers the use of antisense inhibitors as drugs, including chemistries, antisense inhibitor designs called "motifs," methods of use of antisense inhibitors, and mechanisms of action by which antisense inhibitors inactivate an RNA target. Isis' patent estate also covers the use of antisense inhibitors as tools for gene functionalization and target validation. Isis builds its intellectual property position through internal scientific innovation and by licensing Isis Pharmaceuticals, Inc. is exploiting its expertise in RNA to discover and develop novel human therapeutic drugs. The company has commercialized its first product, Vitravene® (fomivirsen), to treat CMV-induced retinitis in AIDS patients. In addition, Isis has 13 antisense products in its development pipeline with two in late-stage development and six in Phase II human clinical trials. Affinitac™, an inhibitor of PKC-alpha, is in Phase III trials for non-small cell lung cancer, and alicaforsen (ISIS 2302), an ICAM-1 inhibitor, is in a Phase III trial in Crohn's disease. Isis has a broad patent estate as the owner or exclusive licensee of nearly 1000 issued patents worldwide. Isis' GeneTrove™ division uses antisense to assist pharmaceutical industry partners in validating and prioritizing potential gene targets through customized services. Ibis Therapeutics™ is a division focused on the discovery of small molecule drugs that bind to RNA. Additional information about Isis is available at www.isispharm.com.

This press release contains forward-looking statements concerning Isis Pharmaceuticals and the potential of the company's intellectual property position. Any statement describing a goal, expectation, intention or belief of the Company is a forward-looking statement and should be considered an at-risk statement. Such statements are subject to certain risks and uncertainties, particularly those inherent in the process of discovering, developing and commercializing drugs that are safe and effective for use as human therapeutics and financing such activities. Actual results could differ materially from those projected in this release. As a result, the reader is cautioned not to rely on these forward-looking statements. These and other risks concerning Isis' research and development programs are described in additional detail in the Company's Annual Report on Form 10K, for the period ended



December 31, 2001, which is on file with the U.S. Securities and Exchange Commission, copies of which are available from the Company.

Affinitac™, a trademark of Eli Lilly and Company, is an investigational cancer compound being developed through an alliance between Lilly and Isis Pharmaceuticals, Inc. and marketed globally by Lilly. GeneTrove™ and Ibis Therapeutics™ are trademarks of Isis Pharmaceuticals, Inc. Vitravene® is a registered trademark of Novartis AG.




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ISIS PHARMACEUTICALS AND SEQUITUR SETTLE PATENT INFRINGEMENT LAW SUIT