September 21, 2011

 

 

United States Securities and Exchange Commission

Division of Corporate Finance

Attn:  Jim B. Rosenberg, Senior Assistant Chief Accountant

100 F Street, NE

Washington, D.C. 20549

 

Re:

Isis Pharmaceuticals, Inc.

 

Form 10-K for the Year Ended December 31, 2010

 

Form 10-Q for the Quarterly Period Ended March 31, 2011

 

Schedule 14A

 

File No. 000-19125

 

Dear Mr. Rosenburg:

 

On behalf of Isis Pharmaceuticals, Inc. (the “Company,” “Isis” or “we”), enclosed for electronic filing via EDGAR pursuant to the Securities Act of 1933, please find a status update to your follow-up comments in reference to the Company’s Form 10-Q for the quarterly period ended March 31, 2011, File No. 000-19125.

 

Based on our conversation with Ms. Nakada on September 19, 2011, we will respond to the Staff’s follow-up comments contained in its September 9, 2011 letter by October 7, 2011.

 

Should you have any questions regarding our responses or require any additional information, please contact me at (760) 603-2492 or B. Lynne Parshall, Chief Operating Officer and Chief Financial Officer at (760) 603-2460.

 

Sincerely,

 

 

 

/s/ Elizabeth Hougen

 

 

 

 

 

Elizabeth Hougen

 

Vice President Finance and Chief Accounting Officer,

 

Isis Pharmaceuticals, Inc.